HL_1QFQ_001

3D structure

PDB id

1QFQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacteriophage Lambda N-protein-NutboxB-RNA Complex

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UGAAAAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1QFQ_001 not in the Motif Atlas

Geometric match to HL_4AL5_001

Geometric discrepancy: 0.2578

The information below is about HL_4AL5_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

1QFQ|1|A|U|5
1QFQ|1|A|G|6
1QFQ|1|A|A|7
1QFQ|1|A|A|8
1QFQ|1|A|A|9
1QFQ|1|A|A|10
1QFQ|1|A|A|11

Current chains

Chain A

15-mer nutRboxB RNA hairpin

Nearby chains

Chain B

36-mer N-terminal peptide of the N protein