HL_1QVF_002
3D structure
- PDB id
- 1QVF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGCACGGAG
- Length
- 9 nucleotides
- Bulged bases
- 1QVF|1|0|C|87
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1QVF_002 not in the Motif Atlas
- Homologous match to HL_4V9F_002
- Geometric discrepancy: 0.0603
- The information below is about HL_4V9F_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 27
Unit IDs
1QVF|1|0|C|83
1QVF|1|0|G|84
1QVF|1|0|C|85
1QVF|1|0|A|86
1QVF|1|0|C|87
1QVF|1|0|G|88
1QVF|1|0|G|89
1QVF|1|0|A|90
1QVF|1|0|G|91
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 1
- 50S ribosomal protein L39e
- Chain S
- 50S ribosomal protein L24P
- Chain U
- 50S ribosomal protein L29P
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