HL_1QVF_014
3D structure
- PDB id
- 1QVF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGCAUCGAC
- Length
- 9 nucleotides
- Bulged bases
- 1QVF|1|0|G|417
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1QVF_014 not in the Motif Atlas
- Homologous match to HL_4V9F_014
- Geometric discrepancy: 0.0401
- The information below is about HL_4V9F_014
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
1QVF|1|0|G|416
1QVF|1|0|G|417
1QVF|1|0|C|418
1QVF|1|0|A|419
1QVF|1|0|U|420
1QVF|1|0|C|421
1QVF|1|0|G|422
1QVF|1|0|A|423
1QVF|1|0|C|424
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 2
- 50S ribosomal protein L44E
- Chain K
- 50S ribosomal protein L15P
- Chain L
- L15 Ribosomal Protein
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