HL_1QVF_060

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1QVF_060 not in the Motif Atlas

Homologous match to HL_4V9F_060

Geometric discrepancy: 0.0355

The information below is about HL_4V9F_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

1QVF|1|0|C|2411
1QVF|1|0|G|2412
1QVF|1|0|A|2413
1QVF|1|0|A|2414
1QVF|1|0|A|2415
1QVF|1|0|G|2416

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain M

50S ribosomal protein L18P

Chain P

50S ribosomal protein L21e