HL_1QVF_061

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUUGAUGC

Length

9 nucleotides

Bulged bases

1QVF|1|0|C|2443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1QVF_061 not in the Motif Atlas

Homologous match to HL_4V9F_061

Geometric discrepancy: 0.0396

The information below is about HL_4V9F_061

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

27

Unit IDs

1QVF|1|0|G|2442
1QVF|1|0|C|2443
1QVF|1|0|U|2444
1QVF|1|0|U|2445
1QVF|1|0|G|2446
1QVF|1|0|A|2447
1QVF|1|0|U|2448
1QVF|1|0|G|2449
1QVF|1|0|C|2450

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 2

50S ribosomal protein L44E

Chain K

50S ribosomal protein L15P

Chain L

L15 Ribosomal Protein