HL_1QVG_014

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGCAUCGAC

Length

9 nucleotides

Bulged bases

1QVG|1|0|G|417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1QVG_014 not in the Motif Atlas

Homologous match to HL_4V9F_014

Geometric discrepancy: 0.0627

The information below is about HL_4V9F_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

1QVG|1|0|G|416
1QVG|1|0|G|417
1QVG|1|0|C|418
1QVG|1|0|A|419
1QVG|1|0|U|420
1QVG|1|0|C|421
1QVG|1|0|G|422
1QVG|1|0|A|423
1QVG|1|0|C|424

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 2

50S ribosomal protein L44E

Chain K

50S ribosomal protein L15P

Chain L

L15 Ribosomal Protein