HL_1QVG_025
3D structure
- PDB id
- 1QVG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UGAAAGG
- Length
- 7 nucleotides
- Bulged bases
- 1QVG|1|0|A|874, 1QVG|1|0|G|877
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1QVG_025 not in the Motif Atlas
- Homologous match to HL_4V9F_025
- Geometric discrepancy: 0.0742
- The information below is about HL_4V9F_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87954.2
- Basepair signature
- cWW-tSW-F
- Number of instances in this motif group
- 7
Unit IDs
1QVG|1|0|U|872
1QVG|1|0|G|873
1QVG|1|0|A|874
1QVG|1|0|A|875
1QVG|1|0|A|876
1QVG|1|0|G|877
1QVG|1|0|G|878
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain A
- 50S ribosomal protein L2P
Coloring options: