3D structure

PDB id
1QVG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UGAAAA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1QVG_033 not in the Motif Atlas
Homologous match to HL_4V9F_033
Geometric discrepancy: 0.0502
The information below is about HL_4V9F_033
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

1QVG|1|0|U|1326
1QVG|1|0|G|1327
1QVG|1|0|A|1328
1QVG|1|0|A|1329
1QVG|1|0|A|1330
1QVG|1|0|A|1331

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain X
50S ribosomal protein L32E

Coloring options:


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