HL_1QVG_044

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

1QVG|1|0|U|1771

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1QVG_044 not in the Motif Atlas

Geometric match to HL_4V9F_044

Geometric discrepancy: 0.0653

The information below is about HL_4V9F_044

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

1QVG|1|0|C|1769
1QVG|1|0|U|1770
1QVG|1|0|U|1771
1QVG|1|0|C|1772
1QVG|1|0|G|1773
1QVG|1|0|G|1774

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain Y

L37Ae 50S ribosomal protein