3D structure

PDB id
1QVG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
1QVG|1|0|U|1771
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1QVG_044 not in the Motif Atlas
Geometric match to HL_4V9F_044
Geometric discrepancy: 0.0653
The information below is about HL_4V9F_044
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

1QVG|1|0|C|1769
1QVG|1|0|U|1770
1QVG|1|0|U|1771
1QVG|1|0|C|1772
1QVG|1|0|G|1773
1QVG|1|0|G|1774

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain Y
L37Ae 50S ribosomal protein

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.104 s