HL_1QVG_056

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAAAGAUAUCG

Length

13 nucleotides

Bulged bases

1QVG|1|0|A|2302, 1QVG|1|0|C|2309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1QVG_056 not in the Motif Atlas

Homologous match to HL_4V9F_056

Geometric discrepancy: 0.0422

The information below is about HL_4V9F_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

1QVG|1|0|C|2298
1QVG|1|0|G|2299
1QVG|1|0|A|2300
1QVG|1|0|A|2301
1QVG|1|0|A|2302
1QVG|1|0|A|2303
1QVG|1|0|G|2304
1QVG|1|0|A|2305
1QVG|1|0|U|2306
1QVG|1|0|A|2307
1QVG|1|0|U|2308
1QVG|1|0|C|2309
1QVG|1|0|G|2310

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain H

L10 Ribosomal Protein

Chain P

50S ribosomal protein L21e