HL_1QVG_058
3D structure
- PDB id
- 1QVG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UGCAAGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1QVG_058 not in the Motif Atlas
- Homologous match to HL_4V9F_058
- Geometric discrepancy: 0.0596
- The information below is about HL_4V9F_058
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
1QVG|1|0|U|2358
1QVG|1|0|G|2359
1QVG|1|0|C|2360
1QVG|1|0|A|2361
1QVG|1|0|A|2362
1QVG|1|0|G|2363
1QVG|1|0|A|2364
1QVG|1|0|G|2365
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 2
- 50S ribosomal protein L44E
- Chain H
- L10 Ribosomal Protein
- Chain M
- 50S ribosomal protein L18P
- Chain P
- 50S ribosomal protein L21e
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