HL_1QVG_063

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGCAGAAG

Length

8 nucleotides

Bulged bases

1QVG|1|0|G|2564

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1QVG_063 not in the Motif Atlas

Homologous match to HL_4V9F_063

Geometric discrepancy: 0.0458

The information below is about HL_4V9F_063

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

1QVG|1|0|U|2563
1QVG|1|0|G|2564
1QVG|1|0|C|2565
1QVG|1|0|A|2566
1QVG|1|0|G|2567
1QVG|1|0|A|2568
1QVG|1|0|A|2569
1QVG|1|0|G|2570

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain E

50S ribosomal protein L6P