3D structure

PDB id
1QVG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UACCCAUCCCGAACA
Length
15 nucleotides
Bulged bases
1QVG|1|9|C|3040
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1QVG_075 not in the Motif Atlas
Homologous match to HL_4V9F_074
Geometric discrepancy: 0.0683
The information below is about HL_4V9F_074
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_97756.2
Basepair signature
cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
Number of instances in this motif group
6

Unit IDs

1QVG|1|9|U|3033
1QVG|1|9|A|3034
1QVG|1|9|C|3035
1QVG|1|9|C|3036
1QVG|1|9|C|3037
1QVG|1|9|A|3038
1QVG|1|9|U|3039
1QVG|1|9|C|3040
1QVG|1|9|C|3041
1QVG|1|9|C|3042
1QVG|1|9|G|3043
1QVG|1|9|A|3044
1QVG|1|9|A|3045
1QVG|1|9|C|3046
1QVG|1|9|A|3047

Current chains

Chain 9
5S ribosomal RNA

Nearby chains

Chain 0
Large subunit ribosomal RNA; LSU rRNA
Chain D
50S ribosomal protein L5P
Chain M
50S ribosomal protein L18P

Coloring options:


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