HL_1R2P_004

3D structure

PDB id

1R2P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of domain 5 from the ai5(gamma) group II intron

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

1R2P|4|A|A|16

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1R2P_004 not in the Motif Atlas

Geometric match to HL_7RQB_021

Geometric discrepancy: 0.2499

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

1R2P|4|A|U|14
1R2P|4|A|G|15
1R2P|4|A|A|16
1R2P|4|A|A|17
1R2P|4|A|A|18
1R2P|4|A|G|19

Current chains

Chain A

34-MER

Nearby chains