HL_1R7W_020

3D structure

PDB id

1R7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR STRUCTURE OF THE R(GGAGGACAUCCCUCACGGGUGACCGUGGUCCUCC), DOMAIN IV STEM-LOOP B OF ENTEROVIRAL IRES WITH AUCCCU BULGE

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GGUGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1R7W_020 not in the Motif Atlas

Geometric match to HL_4V9F_072

Geometric discrepancy: 0.1647

The information below is about HL_4V9F_072

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

1R7W|20|A|G|18
1R7W|20|A|G|19
1R7W|20|A|U|20
1R7W|20|A|G|21
1R7W|20|A|A|22
1R7W|20|A|C|23

Current chains

Chain A

34-MER

Nearby chains