HL_1RY1_003

3D structure

PDB id

1RY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the signal recognition particle interacting with the elongation-arrested ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

GGGAGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1RY1_003 not in the Motif Atlas

Homologous match to HL_1MFQ_001

Geometric discrepancy: 0.0003

The information below is about HL_1MFQ_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

1RY1|1|A|G|146
1RY1|1|A|G|147
1RY1|1|A|G|148
1RY1|1|A|A|149
1RY1|1|A|G|150
1RY1|1|A|C|151

Current chains

Chain A

SRP S domain

Nearby chains

Chain B

SRP19