HL_1S2F_001

3D structure

PDB id

1S2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Average solution structure of a pseudo-5'-splice site from the negative regulator of splicing of Rous Sarcoma virus

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UUUGUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1S2F_001 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.2318

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

1S2F|1|A|U|916
1S2F|1|A|U|917
1S2F|1|A|U|918
1S2F|1|A|G|919
1S2F|1|A|U|920
1S2F|1|A|A|921

Current chains

Chain A

5'-R(*GP*GP*GP*GP*AP*GP*UP*GP*GP*UP*UP*UP*GP*UP*AP*UP*CP*CP*UP*UP*CP*CP*C)-3'

Nearby chains