HL_1S72_001

3D structure

PDB id

1S72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGCCAAGCUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11509.7

Basepair signature

cWW-R-R-cSH-cSH-R

Number of instances in this motif group

8

Unit IDs

1S72|1|0|U|55
1S72|1|0|G|56
1S72|1|0|C|57
1S72|1|0|C|58
1S72|1|0|A|59
1S72|1|0|A|60
1S72|1|0|G|61
1S72|1|0|C|62
1S72|1|0|U|63
1S72|1|0|G|64

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L39e

Chain S

50S ribosomal protein L23P

Chain V

50S ribosomal protein L29P