HL_1S72_068

3D structure

PDB id

1S72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

1S72|1|0|G|2786, 1S72|1|0|C|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70420.7

Basepair signature

cWW-tSH-cWH-tSH-tWH-tHW-tHW-R-R

Number of instances in this motif group

10

Unit IDs

1S72|1|0|C|2780
1S72|1|0|U|2781
1S72|1|0|G|2782
1S72|1|0|A|2783
1S72|1|0|A|2784
1S72|1|0|C|2785
1S72|1|0|G|2786
1S72|1|0|C|2787
1S72|1|0|A|2788
1S72|1|0|U|2789
1S72|1|0|C|2790
1S72|1|0|U|2791
1S72|1|0|A|2792
1S72|1|0|A|2793
1S72|1|0|G|2794

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6P

Chain J

50S ribosomal protein L13P