HL_1SM1_011

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GGUGAGAGUCC

Length

11 nucleotides

Bulged bases

1SM1|1|0|G|340, 1SM1|1|0|A|341, 1SM1|1|0|G|342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_011 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2687

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

1SM1|1|0|G|337
1SM1|1|0|G|338
1SM1|1|0|U|339
1SM1|1|0|G|340
1SM1|1|0|A|341
1SM1|1|0|G|342
1SM1|1|0|A|343
1SM1|1|0|G|344
1SM1|1|0|U|345
1SM1|1|0|C|346
1SM1|1|0|C|347

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L4

Chain S

50S RIBOSOMAL PROTEIN L24