HL_1SM1_012

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GUUCGUGAAAC

Length

11 nucleotides

Bulged bases

1SM1|1|0|G|399, 1SM1|1|0|U|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_012 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.5805

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

1SM1|1|0|G|395
1SM1|1|0|U|396
1SM1|1|0|U|397
1SM1|1|0|C|398
1SM1|1|0|G|399
1SM1|1|0|U|400
1SM1|1|0|G|401
1SM1|1|0|A|402
1SM1|1|0|A|403
1SM1|1|0|A|404
1SM1|1|0|C|405

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain Y

50S RIBOSOMAL PROTEIN L31