HL_1SM1_013

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

1SM1|1|0|G|424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_013 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.1212

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

1SM1|1|0|G|423
1SM1|1|0|G|424
1SM1|1|0|A|425
1SM1|1|0|C|426
1SM1|1|0|C|427
1SM1|1|0|A|428
1SM1|1|0|C|429
1SM1|1|0|C|430

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains