HL_1SM1_017

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

1SM1|1|0|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_017 not in the Motif Atlas

Homologous match to HL_7A0S_018

Geometric discrepancy: 0.3731

The information below is about HL_7A0S_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.8

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

1SM1|1|0|U|575
1SM1|1|0|A|576
1SM1|1|0|U|577
1SM1|1|0|U|578
1SM1|1|0|G|579
1SM1|1|0|A|580
1SM1|1|0|A|581
1SM1|1|0|G|582
1SM1|1|0|C|583
1SM1|1|0|A|584

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain J

50S RIBOSOMAL PROTEIN L15

Chain P

50S RIBOSOMAL PROTEIN L21