HL_1SM1_022

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

UGCUGAAACA

Length

10 nucleotides

Bulged bases

1SM1|1|0|U|760, 1SM1|1|0|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_022 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.2648

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

1SM1|1|0|U|757
1SM1|1|0|G|758
1SM1|1|0|C|759
1SM1|1|0|U|760
1SM1|1|0|G|761
1SM1|1|0|A|762
1SM1|1|0|A|763
1SM1|1|0|A|764
1SM1|1|0|C|765
1SM1|1|0|A|766

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain 5

QUINUPRISTIN

Chain B

50S RIBOSOMAL PROTEIN L3

Chain Q

50S RIBOSOMAL PROTEIN L22

Chain Z

50S RIBOSOMAL PROTEIN L32