HL_1SM1_026

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

AGCUAACU

Length

8 nucleotides

Bulged bases

1SM1|1|0|C|968, 1SM1|1|0|U|969, 1SM1|1|0|C|972

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_026 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.5341

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

1SM1|1|0|A|966
1SM1|1|0|G|967
1SM1|1|0|C|968
1SM1|1|0|U|969
1SM1|1|0|A|970
1SM1|1|0|A|971
1SM1|1|0|C|972
1SM1|1|0|U|973

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain K

50S RIBOSOMAL PROTEIN L16