HL_1SM1_028

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

1SM1|1|0|A|1081, 1SM1|1|0|G|1082, 1SM1|1|0|C|1083

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_028 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.4823

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

1SM1|1|0|C|1075
1SM1|1|0|U|1076
1SM1|1|0|U|1077
1SM1|1|0|A|1078
1SM1|1|0|G|1079
1SM1|1|0|A|1080
1SM1|1|0|A|1081
1SM1|1|0|G|1082
1SM1|1|0|C|1083
1SM1|1|0|A|1084
1SM1|1|0|G|1085

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain G

50S RIBOSOMAL PROTEIN L11

Chain T

GENERAL STRESS PROTEIN CTC