HL_1SM1_036

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GCUAUGGCUAUGC

Length

13 nucleotides

Bulged bases

1SM1|1|0|A|1468, 1SM1|1|0|U|1473, 1SM1|1|0|A|1474, 1SM1|1|0|U|1475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1SM1|1|0|G|1465
1SM1|1|0|C|1466
1SM1|1|0|U|1467
1SM1|1|0|A|1468
1SM1|1|0|U|1469
1SM1|1|0|G|1470
1SM1|1|0|G|1471
1SM1|1|0|C|1472
1SM1|1|0|U|1473
1SM1|1|0|A|1474
1SM1|1|0|U|1475
1SM1|1|0|G|1476
1SM1|1|0|C|1477

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain L

50S RIBOSOMAL PROTEIN L17