HL_1SM1_049

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

1SM1|1|0|A|2013, 1SM1|1|0|A|2014, 1SM1|1|0|G|2015, 1SM1|1|0|U|2017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_049 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.3322

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

1SM1|1|0|G|2010
1SM1|1|0|U|2011
1SM1|1|0|A|2012
1SM1|1|0|A|2013
1SM1|1|0|A|2014
1SM1|1|0|G|2015
1SM1|1|0|A|2016
1SM1|1|0|U|2017
1SM1|1|0|G|2018
1SM1|1|0|C|2019

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3