HL_1SM1_052

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CCAAAAUGUAACG

Length

13 nucleotides

Bulged bases

1SM1|1|0|A|2247, 1SM1|1|0|C|2254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_052 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.429

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

1SM1|1|0|C|2243
1SM1|1|0|C|2244
1SM1|1|0|A|2245
1SM1|1|0|A|2246
1SM1|1|0|A|2247
1SM1|1|0|A|2248
1SM1|1|0|U|2249
1SM1|1|0|G|2250
1SM1|1|0|U|2251
1SM1|1|0|A|2252
1SM1|1|0|A|2253
1SM1|1|0|C|2254
1SM1|1|0|G|2255

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain K

50S RIBOSOMAL PROTEIN L16

Chain U

50S RIBOSOMAL PROTEIN L27