HL_1SM1_066

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

1SM1|1|0|A|2795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_066 not in the Motif Atlas

Homologous match to HL_7A0S_067

Geometric discrepancy: 0.1669

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

1SM1|1|0|G|2794
1SM1|1|0|A|2795
1SM1|1|0|A|2796
1SM1|1|0|G|2797
1SM1|1|0|A|2798
1SM1|1|0|C|2799
1SM1|1|0|C|2800
1SM1|1|0|A|2801
1SM1|1|0|C|2802

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain L

50S RIBOSOMAL PROTEIN L17

Chain N

50S RIBOSOMAL PROTEIN L19