HL_1SM1_071

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

GUGAGAGUC

Length

9 nucleotides

Bulged bases

1SM1|1|0|G|340, 1SM1|1|0|A|341, 1SM1|1|0|G|342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_071 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.567

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

1SM1|1|0|G|338
1SM1|1|0|U|339
1SM1|1|0|G|340
1SM1|1|0|A|341
1SM1|1|0|G|342
1SM1|1|0|A|343
1SM1|1|0|G|344
1SM1|1|0|U|345
1SM1|1|0|C|346

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L4

Chain S

50S RIBOSOMAL PROTEIN L24