HL_1SM1_077

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

UUGAGG

Length

6 nucleotides

Bulged bases

1SM1|1|0|U|840, 1SM1|1|0|G|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_077 not in the Motif Atlas

Homologous match to HL_7A0S_024

Geometric discrepancy: 0.4119

The information below is about HL_7A0S_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_55195.3

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

1SM1|1|0|U|839
1SM1|1|0|U|840
1SM1|1|0|G|841
1SM1|1|0|A|842
1SM1|1|0|G|843
1SM1|1|0|G|844

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain J

50S RIBOSOMAL PROTEIN L15