HL_1T4L_006

3D structure

PDB id

1T4L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of double-stranded RNA binding domain of S. cerevisiae RNase III (Rnt1p) in complex with the 5' terminal RNA hairpin of snR47 precursor

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CAGAAG

Length

6 nucleotides

Bulged bases

1T4L|6|A|A|17

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1T4L_006 not in the Motif Atlas

Geometric match to HL_4WRT_001

Geometric discrepancy: 0.3985

The information below is about HL_4WRT_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19413.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

9

Unit IDs

1T4L|6|A|C|14
1T4L|6|A|A|15
1T4L|6|A|G|16
1T4L|6|A|A|17
1T4L|6|A|A|18
1T4L|6|A|G|19

Current chains

Chain A

5' terminal hairpin of snR47 precursor

Nearby chains

Chain B

Ribonuclease III