HL_1VBY_002

3D structure

PDB id

1VBY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, and Mn2+ bound

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUUGCACUCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03958.1

Basepair signature

cWW-R-R-R-R-R-R-R-R-R

Number of instances in this motif group

14

Unit IDs

1VBY|1|B|C|147
1VBY|1|B|A|148
1VBY|1|B|U|149
1VBY|1|B|U|150
1VBY|1|B|G|151
1VBY|1|B|C|152
1VBY|1|B|A|153
1VBY|1|B|C|154
1VBY|1|B|U|155
1VBY|1|B|C|156
1VBY|1|B|C|157
1VBY|1|B|G|158

Current chains

Chain B

Hepatitis Delta virus ribozyme

Nearby chains

Chain A

U1 small nuclear ribonucleoprotein A