HL_1VQ4_058

3D structure

PDB id

1VQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DAA' bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

UGCAAGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQ4_058 not in the Motif Atlas

Homologous match to HL_4V9F_058

Geometric discrepancy: 0.0528

The information below is about HL_4V9F_058

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

27

Unit IDs

1VQ4|1|0|U|2358
1VQ4|1|0|G|2359
1VQ4|1|0|C|2360
1VQ4|1|0|A|2361
1VQ4|1|0|A|2362
1VQ4|1|0|G|2363
1VQ4|1|0|A|2364
1VQ4|1|0|G|2365

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain H

50S RIBOSOMAL PROTEIN L10E

Chain N

50S ribosomal protein L18P

Chain Q

50S ribosomal protein L21e