HL_1VQ4_069

3D structure

PDB id

1VQ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DAA' bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GUACAAGAC

Length

9 nucleotides

Bulged bases

1VQ4|1|0|U|2837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQ4_069 not in the Motif Atlas

Homologous match to HL_4V9F_069

Geometric discrepancy: 0.0398

The information below is about HL_4V9F_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37889.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

1VQ4|1|0|G|2836
1VQ4|1|0|U|2837
1VQ4|1|0|A|2838
1VQ4|1|0|C|2839
1VQ4|1|0|A|2840
1VQ4|1|0|A|2841
1VQ4|1|0|G|2842
1VQ4|1|0|A|2843
1VQ4|1|0|C|2844

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain R

50S ribosomal protein L22P

Chain X

50S ribosomal protein L31e