HL_1VQ5_006

3D structure

PDB id

1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

1VQ5|1|0|A|166

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQ5_006 not in the Motif Atlas

Geometric match to HL_4V9F_006

Geometric discrepancy: 0.0343

The information below is about HL_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

1VQ5|1|0|G|164
1VQ5|1|0|A|165
1VQ5|1|0|A|166
1VQ5|1|0|A|167
1VQ5|1|0|C|168
1VQ5|1|0|A|169
1VQ5|1|0|U|170
1VQ5|1|0|C|171

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain L

50S ribosomal protein L15P

Chain M

50S Ribosomal Protein L15E