HL_1VQ5_006
3D structure
- PDB id
- 1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GAAACAUC
- Length
- 8 nucleotides
- Bulged bases
- 1VQ5|1|0|A|166
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VQ5_006 not in the Motif Atlas
- Geometric match to HL_4V9F_006
- Geometric discrepancy: 0.0343
- The information below is about HL_4V9F_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48677.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
1VQ5|1|0|G|164
1VQ5|1|0|A|165
1VQ5|1|0|A|166
1VQ5|1|0|A|167
1VQ5|1|0|C|168
1VQ5|1|0|A|169
1VQ5|1|0|U|170
1VQ5|1|0|C|171
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 3
- 50S ribosomal protein L44E
- Chain L
- 50S ribosomal protein L15P
- Chain M
- 50S Ribosomal Protein L15E
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