HL_1VQ5_024

3D structure

PDB id

1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UCCUACAAUA

Length

10 nucleotides

Bulged bases

1VQ5|1|0|U|840, 1VQ5|1|0|A|844, 1VQ5|1|0|U|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQ5_024 not in the Motif Atlas

Homologous match to HL_4V9F_024

Geometric discrepancy: 0.0303

The information below is about HL_4V9F_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

1VQ5|1|0|U|837
1VQ5|1|0|C|838
1VQ5|1|0|C|839
1VQ5|1|0|U|840
1VQ5|1|0|A|841
1VQ5|1|0|C|842
1VQ5|1|0|A|843
1VQ5|1|0|A|844
1VQ5|1|0|U|845
1VQ5|1|0|A|846

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain B

50S ribosomal protein L3P

Chain R

50S ribosomal protein L22P