HL_1VQ5_071

3D structure

PDB id

1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

1VQ5|1|9|C|3040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQ5_071 not in the Motif Atlas

Homologous match to HL_7RQB_070

Geometric discrepancy: 0.1063

The information below is about HL_7RQB_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87939.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

8

Unit IDs

1VQ5|1|9|C|3037
1VQ5|1|9|A|3038
1VQ5|1|9|U|3039
1VQ5|1|9|C|3040
1VQ5|1|9|C|3041
1VQ5|1|9|C|3042
1VQ5|1|9|G|3043

Current chains

Chain 9

5S ribosomal RNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain D

50S ribosomal protein L5P

Chain N

50S ribosomal protein L18P