HL_1VQ5_073
3D structure
- PDB id
- 1VQ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'RAA' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- U(OMU)(OMG)UUCG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VQ5_073 not in the Motif Atlas
- Homologous match to HL_4V9F_073
- Geometric discrepancy: 0.078
- The information below is about HL_4V9F_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_30068.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
1VQ5|1|0|U|2586
1VQ5|1|0|OMU|2587
1VQ5|1|0|OMG|2588
1VQ5|1|0|U|2589
1VQ5|1|0|U|2590
1VQ5|1|0|C|2591
1VQ5|1|0|G|2592
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 4
- 5'-D(*(DC)P*(DC)P*(5AA)P*(2OP)P*(PO2)P*AP*C*C)-3')
- Chain B
- 50S ribosomal protein L3P
- Chain K
- 50S ribosomal protein L14P
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