HL_1VQ7_069

3D structure

PDB id

1VQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCA' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GUACAAGAC

Length

9 nucleotides

Bulged bases

1VQ7|1|0|U|2837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQ7_069 not in the Motif Atlas

Homologous match to HL_4V9F_069

Geometric discrepancy: 0.0303

The information below is about HL_4V9F_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

1VQ7|1|0|G|2836
1VQ7|1|0|U|2837
1VQ7|1|0|A|2838
1VQ7|1|0|C|2839
1VQ7|1|0|A|2840
1VQ7|1|0|A|2841
1VQ7|1|0|G|2842
1VQ7|1|0|A|2843
1VQ7|1|0|C|2844

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain R

50S ribosomal protein L22P

Chain X

50S ribosomal protein L31e