HL_1VQ8_014
3D structure
- PDB id
- 1VQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.2 Å
Loop
- Sequence
- GGCAUCGAC
- Length
- 9 nucleotides
- Bulged bases
- 1VQ8|1|0|G|417
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VQ8_014 not in the Motif Atlas
- Homologous match to HL_4V9F_014
- Geometric discrepancy: 0.0625
- The information below is about HL_4V9F_014
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
1VQ8|1|0|G|416
1VQ8|1|0|G|417
1VQ8|1|0|C|418
1VQ8|1|0|A|419
1VQ8|1|0|U|420
1VQ8|1|0|C|421
1VQ8|1|0|G|422
1VQ8|1|0|A|423
1VQ8|1|0|C|424
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 3
- 50S ribosomal protein L44E
- Chain L
- 50S ribosomal protein L15P
- Chain M
- 50S Ribosomal Protein L15E
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