HL_1VQ9_076

3D structure

PDB id

1VQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA-PHE-CAP-BIO and the antibiotic sparsomycin bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UACCCAUCCCGAACA

Length

15 nucleotides

Bulged bases

1VQ9|1|9|C|3040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQ9_076 not in the Motif Atlas

Homologous match to HL_4V9F_074

Geometric discrepancy: 0.0553

The information below is about HL_4V9F_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.3

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

1VQ9|1|9|U|3033
1VQ9|1|9|A|3034
1VQ9|1|9|C|3035
1VQ9|1|9|C|3036
1VQ9|1|9|C|3037
1VQ9|1|9|A|3038
1VQ9|1|9|U|3039
1VQ9|1|9|C|3040
1VQ9|1|9|C|3041
1VQ9|1|9|C|3042
1VQ9|1|9|G|3043
1VQ9|1|9|A|3044
1VQ9|1|9|A|3045
1VQ9|1|9|C|3046
1VQ9|1|9|A|3047

Current chains

Chain 9

5S ribosomal RNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain D

50S ribosomal protein L5P

Chain N

50S ribosomal protein L18P