HL_1VQK_009

3D structure

PDB id

1VQK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CUCACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQK_009 not in the Motif Atlas

Homologous match to HL_4V9F_009

Geometric discrepancy: 0.074

The information below is about HL_4V9F_009

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

1VQK|1|0|C|252
1VQK|1|0|U|253
1VQK|1|0|C|254
1VQK|1|0|A|255
1VQK|1|0|C|256
1VQK|1|0|G|257

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain M

50S Ribosomal Protein L15E