HL_1VQK_049

3D structure

PDB id

1VQK (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CGUACAAG

Length

8 nucleotides

Bulged bases

1VQK|1|0|A|1919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQK_049 not in the Motif Atlas

Homologous match to HL_4V9F_049

Geometric discrepancy: 0.0611

The information below is about HL_4V9F_049

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

1VQK|1|0|C|1916
1VQK|1|0|G|1917
1VQK|1|0|U|1918
1VQK|1|0|A|1919
1VQK|1|0|C|1920
1VQK|1|0|A|1921
1VQK|1|0|A|1922
1VQK|1|0|G|1923

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 3

50S ribosomal protein L44E