HL_1VQK_064
3D structure
- PDB id
- 1VQK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CCDA-PHE-CAP-BIO bound to the a site of the ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- GU(OMU)(OMG)UUCGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VQK_064 not in the Motif Atlas
- Homologous match to HL_4V9F_064
- Geometric discrepancy: 0.0827
- The information below is about HL_4V9F_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
1VQK|1|0|G|2585
1VQK|1|0|U|2586
1VQK|1|0|OMU|2587
1VQK|1|0|OMG|2588
1VQK|1|0|U|2589
1VQK|1|0|U|2590
1VQK|1|0|C|2591
1VQK|1|0|G|2592
1VQK|1|0|C|2593
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 4
- 5'-R(*CP*CP*(DA)*(PHE)*(ACA))-3'
- Chain B
- 50S ribosomal protein L3P
- Chain K
- 50S ribosomal protein L14P
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