HL_1VQL_061

3D structure

PDB id

1VQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCSN' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GCUUGAUGC

Length

9 nucleotides

Bulged bases

1VQL|1|0|C|2443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQL_061 not in the Motif Atlas

Homologous match to HL_4V9F_061

Geometric discrepancy: 0.0571

The information below is about HL_4V9F_061

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

1VQL|1|0|G|2442
1VQL|1|0|C|2443
1VQL|1|0|U|2444
1VQL|1|0|U|2445
1VQL|1|0|G|2446
1VQL|1|0|A|2447
1VQL|1|0|U|2448
1VQL|1|0|G|2449
1VQL|1|0|C|2450

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain L

50S ribosomal protein L15P

Chain M

50S Ribosomal Protein L15E