HL_1VQL_074

3D structure

PDB id

1VQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'DCSN' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

UACCCAUCCCGAACA

Length

15 nucleotides

Bulged bases

1VQL|1|9|C|3040

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQL_074 not in the Motif Atlas

Homologous match to HL_4V9F_074

Geometric discrepancy: 0.0536

The information below is about HL_4V9F_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.3

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

1VQL|1|9|U|3033
1VQL|1|9|A|3034
1VQL|1|9|C|3035
1VQL|1|9|C|3036
1VQL|1|9|C|3037
1VQL|1|9|A|3038
1VQL|1|9|U|3039
1VQL|1|9|C|3040
1VQL|1|9|C|3041
1VQL|1|9|C|3042
1VQL|1|9|G|3043
1VQL|1|9|A|3044
1VQL|1|9|A|3045
1VQL|1|9|C|3046
1VQL|1|9|A|3047

Current chains

Chain 9

5S ribosomal RNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain D

50S ribosomal protein L5P

Chain N

50S ribosomal protein L18P