HL_1VQN_029

3D structure

PDB id

1VQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQN_029 not in the Motif Atlas

Homologous match to HL_4V9F_029

Geometric discrepancy: 0.0934

The information below is about HL_4V9F_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

1VQN|1|0|G|1076
1VQN|1|0|G|1077
1VQN|1|0|A|1078
1VQN|1|0|A|1079
1VQN|1|0|C|1080
1VQN|1|0|A|1081
1VQN|1|0|A|1082
1VQN|1|0|C|1083

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain W

50S ribosomal protein L30P

Chain Y

50S ribosomal protein L32E