HL_1VQN_044

3D structure

PDB id

1VQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

1VQN|1|0|U|1771

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VQN_044 not in the Motif Atlas

Geometric match to HL_5J7L_175

Geometric discrepancy: 0.0659

The information below is about HL_5J7L_175

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

1VQN|1|0|C|1769
1VQN|1|0|U|1770
1VQN|1|0|U|1771
1VQN|1|0|C|1772
1VQN|1|0|G|1773
1VQN|1|0|G|1774

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain Z

50S ribosomal protein L37Ae